Author

Eric S. Tvedte

National Institutes of HealthORCID 0000-0003-1169-3079Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 3 Research Focus:genome assembly· 3 Approach:statistical model· 3 Assay:whole-genome sequencing· 3 Research Focus:database / resource· 2 Approach:experimental assay· 2 Approach:benchmark study· 1 Organism:Drosophila· 1

Frequent Co-Authors

Alexander Astashyn· 1 shared Andrew A. ForbesiD· 1 shared Benjamin C. SparkliniD· 1 shared Brian J. Smith-White· 1 shared Carl E. HjelmeniD· 1 shared David A. RaskoiD· 1 shared Deacon Sweeney· 1 shared Emily W. DavisiD· 1 shared

Activity by Year

2019-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 14 mutual co-author links

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1 shared paperBioinformatics

Alexander Astashyn

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3 papers

Recent·Most cited

BioinformaticsGenome biologyPeer-reviewedFeb 26, 2024

✦ In-depth digest

Rapid and sensitive detection of genome contamination at scale with FCS-GX

Alexander Astashyn, Eric S. Tvedte, Deacon Sweeney…·Terence D. Murphy

FCS-GX, a hashed k-mer cross-species aligner with a 709 Gbp curated database, screens most genomes in 0.1-10 minutes and flagged 36.8 Gbp of contamination in GenBank.

481 citationstop 1%

multiple specieswhole-genome sequencing

𝕏 PostBluesky

GenomicsG3 Genes Genomes GeneticsPeer-reviewedMar 26, 2021

Comparison of long read sequencing technologies in resolving bacteria and fly genomes

Eric S. Tvedte, Mark T. Gasser, Benjamin C. Sparklin…·Julie C. Dunning Hotopp

This study compares PacBio and Oxford Nanopore long-read sequencing technologies for bacterial and fly genome assembly and methylation detection, finding no single technology outperforms others across all metrics.

50 citations

E. coliDrosophila

𝕏 PostBluesky

GenomicsGenome Biology and EvolutionPeer-reviewedSep 23, 2019

Genome of the parasitoid wasp Diachasma alloeum, an emerging model for ecological speciation and transitions to asexual reproduction

Eric S. Tvedte, Kimberly K. O. Walden, Kyle E. McElroy…·Hugh M. Robertson

The paper presents a draft genome assembly of the parasitoid wasp Diachasma alloeum and identifies genomic features related to ecological speciation and asexual reproduction.

47 citationstop 3%

whole-genome sequencingstatistical model

𝕏 PostBluesky