Author

Jinlyung Choi

Iowa State UniversityORCID 0000-0003-4546-2789Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Ecology· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Assay:metagenomics· 3 Research Focus:database / resource· 2 Approach:experimental assay· 2 Organism:bacteria (other)· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Research Focus:differential expression· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Adina HoweiD· 2 shared A ShadeiD· 1 shared Aaron Garoutte· 1 shared AC Howe· 1 shared Brian Gelder· 1 shared Erick Cardenas· 1 shared Fan Yang· 1 shared Jae‐Jin LeeiD· 1 shared

Activity by Year

2016-2020 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 19 mutual co-author links

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2 shared papersBioinformatics

Adina HoweORCID

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3 papers

Recent·Most cited

BioinformaticsbioRxivPreprintJul 1, 2020

MetaFunPrimer: primer design for targeting genes observed in metagenomes

Jia Liu, Paul Villanueva, Jinlyung Choi…·Adina Howe

MetaFunPrimer designs primers for multiple functional genes using metagenomic references, improving targeting of amoA-AOB genes in soil samples compared to existing primers.

DOI 10.1101/2020.07.01.183509

metagenomicsstatistical model

𝕏 PostBluesky

MicrobiologybioRxivPreprintOct 4, 2018

RefSoil+: A reference for antimicrobial resistance genes on soil plasmids

TK Dunivin, J Choi, AC Howe, A Shade

RefSoil+ is a database of soil plasmids that reveals their size, diversity, and antibiotic resistance gene content, suggesting limited potential for plasmid-mediated transfer of resistance genes to clinical strains.

DOI 10.1101/435107

metagenomicsexperimental assay

𝕏 PostBluesky

EcologyThe ISME JournalPeer-reviewedDec 9, 2016

RefSoil: A reference database of soil microbial genomes

Jinlyung Choi, Fan Yang, Ramunas Stepanauskas…·Adina Howe

The paper curates a soil microbial genome database (RefSoil) to improve annotation of soil metagenomes and identifies underrepresented taxa for future sequencing.

DOI 10.1038/ismej.2016.168

bacteria (other)metagenomics

𝕏 PostBluesky