Author

Meichen Yu

Indiana UniversityORCID 0000-0003-4551-0269Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Research Focus:clustering· 1 Approach:contrastive learning· 1 Approach:deep learning· 1 Approach:graph neural network· 1 Organism:human· 1

Frequent Co-Authors

Juexin WangiD· 2 shared Andrew J. SaykiniD· 1 shared Anjun MaiD· 1 shared David Alan BennettiD· 1 shared Dong He XuiD· 1 shared Fatemeh Sadat Fatemi Nasrollahi· 1 shared Filipi N. SilvaiD· 1 shared Jing‐Qiong KangiD· 1 shared

Activity by Year

2024-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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2 shared papersBioinformatics

Juexin WangORCID

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2 papers

Recent·Most cited

BioinformaticsNature CommunicationsPeer-reviewedAug 19, 2025

TrimNN: Characterizing cellular community motifs for studying multicellular topological organization in complex tissues

Yang Yu, Shuang Wang, Jinpu Li…·Juexin Wang

TrimNN identifies spatial cell organization patterns from spatial transcriptomics and proteomics data to reveal associations between cell-type arrangements and phenotypes.

6 citations

spatial transcriptomicsproteomics

𝕏 PostBluesky

BioinformaticsbioRxivPreprintDec 4, 2024

Cell Type Differentiation Using Network Clustering Algorithms

Fatemeh Sadat Fatemi Nasrollahi, Filipi N. Silva, Shiwei Liu…·Santo Fortunato

This study compares clustering algorithms for cell type annotation in scRNA-seq data, finding that Infomap outperforms others in identifying cell types in PBMC and ROSMAP datasets.

2 citations

humanscRNA-seq

𝕏 PostBluesky