Author

Fatemeh Sadat Fatemi Nasrollahi

Indiana University

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Biology Disciplines

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Bioinformatics· 1

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Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Approach:contrastive learning· 1 Approach:graph neural network· 1 Organism:human· 1 Assay:scRNA-seq· 1 Approach:statistical model· 1

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Andrew J. SaykiniD· 1 shared David Alan BennettiD· 1 shared Filipi N. SilvaiD· 1 shared Juexin WangiD· 1 shared Kwangsik T. NhoiD· 1 shared Meichen YuiD· 1 shared Olaf SpornsiD· 1 shared Santo FortunatoiD· 1 shared

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1 paper

Recent·Most cited

BioinformaticsbioRxivPreprintDec 4, 2024

Cell Type Differentiation Using Network Clustering Algorithms

Fatemeh Sadat Fatemi Nasrollahi, Filipi N. Silva, Shiwei Liu…·Santo Fortunato

This study compares clustering algorithms for cell type annotation in scRNA-seq data, finding that Infomap outperforms others in identifying cell types in PBMC and ROSMAP datasets.

2 citations

humanscRNA-seq

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