Author

Filipi N. Silva

Indiana UniversityORCID 0000-0002-9151-6517Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Approach:contrastive learning· 1 Approach:graph neural network· 1 Organism:human· 1 Assay:scRNA-seq· 1 Approach:statistical model· 1

Frequent Co-Authors

Andrew J. SaykiniD· 1 shared David Alan BennettiD· 1 shared Fatemeh Sadat Fatemi Nasrollahi· 1 shared Juexin WangiD· 1 shared Kwangsik T. NhoiD· 1 shared Meichen YuiD· 1 shared Olaf SpornsiD· 1 shared Santo FortunatoiD· 1 shared

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2024-2024 · peak 1/yr

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10 top collaborators · 45 mutual co-author links

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1 shared paperBioinformatics

Andrew J. SaykinORCID

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1 paper

Recent·Most cited

Cell Type Differentiation Using Network Clustering Algorithms

Fatemeh Sadat Fatemi Nasrollahi, Filipi N. Silva, Shiwei Liu, Soumilee Chaudhuri, Meichen Yu, Juexin Wang, Kwangsik T. Nho, Andrew J. Saykin, David Alan Bennett, Olaf Sporns, Santo Fortunato

This study compares clustering algorithms for cell type annotation in scRNA-seq data, finding that Infomap outperforms others in identifying cell types in PBMC and ROSMAP datasets.

bioRxiv · Dec 4, 2024 · PreprintBioinformatics