Zena Lapp

wavess 1.2 simulates within-host virus sequences with an HLA-aware CTL response and variable recombination rate to improve accuracy in immune-dominated regions.

Hypermut 3 detects hypermutation patterns in sequences, handling multistate characters and gaps, and is available as a web and command-line tool.

The paper identifies superinfection as a key mechanism in sustaining complex Plasmodium falciparum infections in mosquitoes by analyzing genetic diversity in a longitudinal cohort.

This paper introduces prewas, an R package that standardizes variant pre-processing for bacterial GWAS to improve reproducibility and interpretability of results.