Nicolas Chiaruttini

ABBA and BraiAn tools enable whole-brain mapping of immediate early genes, revealing distinct expression patterns across brain regions and behavioral conditions.

The paper shows that the ichthyosporean C. perkinsii undergoes symmetry breaking and cleavage divisions to form multicellular colonies with distinct cell types, suggesting ancient or convergent origins of animal-like development.

The paper uses live imaging in zebrafish to show that Tbx6 expression waves, driven by Hes/Her genes, prefigure somite boundaries by arresting in boundary cells that later express Mesp.

The paper introduces a user-friendly image analysis pipeline for tracking single cells in zebrafish embryos, enabling spatiotemporal analysis of cellular dynamics.

MoBIE is a Fiji plugin that enables visualization, sharing, and management of large, multi-modal image data across platforms.

BigDataProcessor2 is a Fiji plugin for handling TB-sized image data, enabling operations like cropping and visualization across large datasets.

LimeSeg is a 3D image segmentation method that simulates lipid membranes to segment biological structures from various images.