Juanjo Bermúdez

The paper compares the performance of different SARS-CoV-2 sequencing protocols, finding that some widely used protocols are inefficient while less-used alternatives show better performance.

The paper introduces a greedy algorithm for genome assembly and shows it produces longer contigs and higher coverage for viral genomes compared to existing tools.

The paper introduces an automated method to infer migration routes from phylogenetic trees, enabling analysis of complex routes previously infeasible to estimate.

SLAST is a local alignment tool that uses high-density seed matches to identify regions for Smith-Waterman alignment, offering advantages in specific use cases.