Author

Sonam Sonam

Indian Institute of Technology DelhiORCID 0000-0003-4777-9659Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Biophysics· 1

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Research Focus:benchmarking· 1 Approach:deep learning· 1 Research Focus:drug response / drug discovery· 1 Research Focus:protein folding & dynamics· 1 Assay:protein sequence· 1 Assay:protein structure· 1 Approach:transformer / foundation model· 1

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Nisha KumariiD· 1 shared Tarak KarmakariD· 1 shared

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2025-2025 · peak 1/yr

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1 shared paperBiophysics

Nisha KumariORCID

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1 paper

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BiophysicsJournal of Chemical Information and ModelingPeer-reviewedJan 7, 2025

Enhanced Sampling Simulations of RNA-peptide Binding using Deep Learning Collective Variables

Nisha Kumari, Sonam Sonam, Tarak Karmakar

This study uses DeepTDA to design collective variables for enhanced sampling simulations of RNA-peptide binding, revealing multiple binding and unbinding events and calculating the free energy surface.

12 citations

protein structureprotein sequence

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