Author

Ash O’Farrell

University of California, Santa CruzORCID 0000-0003-4896-1858Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 1 Research Focus:database / resource· 1 Approach:deep learning· 1 Approach:experimental assay· 1 Organism:human· 1 Assay:scRNA-seq· 1

Frequent Co-Authors

Benedict PateniD· 2 shared Alessandro CulottiiD· 1 shared Alexander Baumann· 1 shared Alexander OstrovskyiD· 1 shared Alexandru MahmoudiD· 1 shared Allie Hajian· 1 shared Ana Stevens· 1 shared Andrew Rula· 1 shared

Activity by Year

2022-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersBioinformatics

Benedict PatenORCID

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2 papers

Recent·Most cited

BioinformaticsCell GenomicsPeer-reviewedMay 31, 2024

Unraveling Neuronal Identities Using SIMS: A Deep Learning Label Transfer Tool for Single-Cell RNA Sequencing Analysis

Jesus Gonzalez-Ferrer, Julian Lehrer, Ash O’Farrell…·Mohammed A. Mostajo-Radji

SIMS is a deep learning tool for single-cell RNA sequencing classification that outperforms existing methods in accuracy and versatility across complex tissues and developmental stages.

15 citations

humanscRNA-seq

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BioinformaticsCell GenomicsPeer-reviewedJan 1, 2022

Inverting the model of genomics data sharing with the NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-space (AnVIL)

Michael C. Schatz, Anthony Philippakis, Enis Afgan…·Jason Walker

The paper describes AnVIL, a cloud-based platform that enables genomic data analysis without data transfer, improving security, scalability, and collaboration.

144 citationstop 1%

experimental assaydatabase / resource

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