Author

Chuhsing Kate Hsiao

National Taiwan UniversityORCID 0000-0003-4905-8484Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:human· 3 Assay:bulk RNA-seq· 2 Approach:statistical model· 2 Approach:Bayesian inference· 1 Research Focus:benchmarking· 1 Research Focus:gene regulatory network inference· 1 Research Focus:GWAS / association mapping· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Rajarshi MukherjeeiD· 2 shared Yu‐Jyun HuangiD· 2 shared Amanda BruckeriD· 1 shared Chi-Hsuan Ho· 1 shared Ching‐Heng LiniD· 1 shared Jin SzatkiewicziD· 1 shared Jung‐Ying TzengiD· 1 shared Patrick F. SullivaniD· 1 shared

Activity by Year

2020-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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2 shared papersBioinformatics

Rajarshi MukherjeeORCID

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3 papers

Recent·Most cited

BioinformaticsbioRxivPreprintJul 30, 2022

Probabilistic Edge Inference of Gene Networks with Bayesian Markov Random Field Modelling

Yu‐Jyun Huang, Rajarshi Mukherjee, Chuhsing Kate Hsiao

This study introduces a Bayesian Markov Random Field model to infer gene network edges, considering both existence and strength, and demonstrates its performance on glioblastoma data.

DOI 10.1101/2022.07.30.501645

humanbulk RNA-seq

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BioinformaticsbioRxivPreprintFeb 1, 2021

The impact of distributional assumptions in gene-set and pathway analysis: how far can it go wrong?

Chi-Hsuan Ho, Yu‐Jyun Huang, Ying-Ju Lai…·Chuhsing Kate Hsiao

This study evaluates the impact of multivariate normality assumptions in gene-set analysis, finding that non-normality affects performance, especially in mixed tumor subtypes.

DOI 10.1101/2021.02.01.429279

humanbulk RNA-seq

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BioinformaticsPLoS Computational BiologyPeer-reviewedMay 4, 2020

Association Tests Using Copy Number Profile Curves (CONCUR) Enhances Power in Rare Copy Number Variant Analysis

Amanda Brucker, Wenbin Lu, Rachel Marceau West…·Jung‐Ying Tzeng

CONCUR improves power in rare CNV analysis by comparing copy number profiles without requiring locus definitions.

7 citations

humanwhole-genome sequencing

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