Author

Caihong Zheng

Chinese Academy of SciencesORCID 0009-0000-1588-242XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 3 Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Organism:mouse· 2 Assay:bulk RNA-seq· 1 Research Focus:cell-cell communication· 1 Assay:ChIP-seq· 1 Approach:deep learning· 1

Frequent Co-Authors

Jun CaiiD· 2 shared Likun ReniD· 2 shared Wenqiu XuiD· 2 shared Feitong Shi· 1 shared Jiang ZhangiD· 1 shared Jie ReniD· 1 shared Jingya Hou· 1 shared Jun CaiiD· 1 shared

Activity by Year

2020-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 26 mutual co-author links

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2 shared papersGenomics

Jun CaiORCID

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3 papers

Recent·Most cited

GenomicsbioRxivPreprintDec 2, 2024

Retrotransposon LINE1 trans-regulatory differentiation process maintain embryonic stem cell identity

Likun Ren, Yue Teng, Wenqiu Xu…·Jun Cai

This study identifies LINE1 RNA's trans-regulatory roles in maintaining ESC identity through distinct mechanisms in differentiation and 2C-like cell processes.

DOI 10.1101/2024.12.02.626147

mousebulk RNA-seq

𝕏 PostBluesky

GenomicsbioRxivPreprintApr 28, 2021

Chromatin-interacting transposon RNAs linking to the core trans-inhibition circuitry for embryonic stem cell identity

Wenqiu Xu, Likun Ren, Caihong Zheng, Jun Cai

The paper identifies transposon RNAs involved in trans-regulation of embryonic stem cell identity through RNA-chromatin interactions and feedback loops.

3 citations

humanmouse

𝕏 PostBluesky

BioinformaticsNature Machine IntelligencePeer-reviewedNov 2, 2020

scCapsNet: a deep learning classifier with the capability of interpretable feature extraction, applicable for single cell RNA data analysis

Lifei Wang, Rui Nie, Zeyang Yu…·Jun Cai

scCapsNet is a deep learning model for single-cell RNA data analysis that provides interpretable feature extraction and accurate cell type classification.

62 citations

scRNA-seqdeep learning

𝕏 PostBluesky