Author

Yi Liu

University of OxfordORCID 0009-0000-2084-7776Unclaimed ORCID profile · follow to get notified of new preprints

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Yi Liu8 papers · Jilin University

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Assay:protein sequence· 2 Approach:statistical model· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Organism:multiple species· 1 Research Focus:phylogenetics / evolution· 1 Research Focus:software / tool· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Steven L. KellyiD· 2 shared David EmmsiD· 1 shared Elizabeth H J RobbinsiD· 1 shared Jonathan HolmesiD· 1 shared Laurence J. BelcheriD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

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5 top collaborators · 7 mutual co-author links

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2 shared papersBioinformatics

Steven L. KellyORCID

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2 papers

Recent·Most cited

BioinformaticsMolecular Biology and EvolutionPeer-reviewedFeb 1, 2026

RECUR: Identifying recurrent amino acid substitutions from multiple sequence alignments

Elizabeth H J Robbins, Yi Liu, Steven L. Kelly

RECUR identifies recurrent amino acid substitutions in multiple sequence alignments, showing widespread evolution in SARS-CoV-2 S protein with functional implications.

1 citation

protein sequencestatistical model

𝕏 PostBluesky

BioinformaticsbioRxivPreprintJul 15, 2025

✦ In-depth digest

OrthoFinder: scalable phylogenetic orthology inference for comparative genomics

David Emms, Yi Liu, Laurence J. Belcher…·Steven L. Kelly

OrthoFinder v3 splits orthogroups at duplications predating the species-tree root, raising OrthoBench accuracy, and assigns extra species to a core run, finishing 1024 species in 128 hours.

44 citations

multiple speciesprotein sequence

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