Author

Jack McGoldrick

Ollscoil na Gaillimhe – University of GalwayORCID 0009-0000-2106-4159Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Systems Biology· 2

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Research Focus:database / resource· 2 Approach:statistical model· 2 Approach:benchmark study· 1 Approach:deep learning· 1 Organism:E. coli· 1 Research Focus:gene regulatory network inference· 1 Assay:metabolomics· 1

Frequent Co-Authors

Ronan M. T. FlemingiD· 2 shared Saleh AlweriD· 2 shared Abraham OsinugaiD· 1 shared Alan Bridge· 1 shared Anne NiknejadiD· 1 shared Chidi Egwu· 1 shared Costas D. MaranasiD· 1 shared Eduard Kerkhoven· 1 shared

Activity by Year

2026-2026 · peak 2/yr

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10 top collaborators · 30 mutual co-author links

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2 shared papersSystems Biology

Ronan M. T. FlemingORCID

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2 papers

Recent·Most cited

Systems BiologyJournal of CheminformaticsPeer-reviewedOct 10, 2026

StereoMapper: Clarifying Metabolite Identity Through Stereochemically Aware Relationship Assignment

Jack McGoldrick, Marco Pagni, Saleh Alwer…·Ronan M. T. Fleming

StereoMapper clarifies metabolite identity by assigning stereochemically aware relationships, achieving high performance in benchmark datasets and improving GEM accuracy.

DOI 10.1186/s13321-026-01278-3

metabolomicsstatistical model

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Systems BiologybioRxivPreprintSep 28, 2026

✦ In-depth digest

Accessing Enzyme Kinetic Data and Prediction Methods at Scale

Saleh Alwer, Hugues Escoffier, Karim Taha…·Ronan M. T. Fleming

OpenKinetics Predictor unifies thirteen enzyme kinetic predictors behind one interface and API; on E. coli iML1515, eight kcat predictors correlate pairwise at r 0.08 to 0.67.

DOI 10.64898/2026.09.25.751968

E. coliprotein sequence

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