Author

Jonathan P. Michael

University of DenverORCID 0009-0000-2298-7828Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Microbiology· 2

Signature Assays, Organisms & Methods

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Organism:bacteria (other)· 1 Research Focus:differential expression· 1 Research Focus:ecology & biodiversity· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Research Focus:host-pathogen & immune response· 1 Assay:metagenomics· 1 Approach:statistical model· 1

Frequent Co-Authors

Adam P. ArkiniD· 1 shared Alexander F. Benson· 1 shared Allegra T. AroniD· 1 shared Allison Z. WerneriD· 1 shared Andrea M. RochaiD· 1 shared Chongle PaniD· 1 shared Daliang NingiD· 1 shared David A. StahliD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperMicrobiology

Adam P. ArkinORCID

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2 papers

Recent·Most cited

A pyoverdine-type metallophore is required for lanthanide-dependent growth in Pseudomonas putida

Kalen Rasmussen, Jonathan P. Michael, Alexander F. Benson, Kelsey J. Ramirez, Morgan A. Ingraham, Allegra T. Aron, Allison Z. Werner

This study identifies pyoverdines as metallophores involved in lanthanide uptake in Pseudomonas putida, expanding their role beyond iron scavenging.

bioRxiv · Sep 8, 2026 · PreprintMicrobiology

Modest functional diversity decline and pronounced composition shifts of microbial communities in a uranium-contaminated aquifer

Yupeng Fan, Dongyu Wang, Joy X. Yang, Daliang Ning, Zhili He, Ping Zhang, Andrea M. Rocha, Naijia Xiao, Jonathan P. Michael, Katie F. Walker, Dominique C. Joyner, Chongle Pan, Michael W. W. Adams, Matthew W. Fields, Eric J. Alm, , Jizhong Z. Zhou

The paper examines microbial community diversity in a uranium-contaminated aquifer, finding reduced taxonomic and phylogenetic diversity but stable functional diversity.

Microbiome · Apr 28, 2025Peer-reviewedMicrobiology