Author

Lorenzo Ruggeri

University of VeronaORCID 0009-0000-2516-1175Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:ChIP-seq· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Organism:human· 1 Approach:statistical model· 1

Frequent Co-Authors

Manuel TognoniD· 2 shared Rosalba GiugnoiD· 2 shared Alisa KumbaraiD· 1 shared Andrea BettiiD· 1 shared

Activity by Year

2025-2025 · peak 2/yr

Co-Author Collaboration Network

4 top collaborators · 6 mutual co-author links

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2 shared papersBioinformatics

Manuel TognonORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintNov 7, 2025

Improving DNA Modeling with WaveDNA: Enhancing Speed, Generalizability, and Interpretability through Wavelet Transformation

Lorenzo Ruggeri, Manuel Tognon, Rosalba Giugno

WaveDNA improves TFBS prediction by using wavelet transforms to convert DNA sequences into images, enabling efficient and interpretable deep learning with fewer parameters and resources.

DOI 10.1101/2025.11.07.687194

ChIP-seqdeep learning

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BioinformaticsbioRxivPreprintMar 20, 2025

Benchmarking PWM and SVM-based Models for Transcription Factor Binding Site Prediction: A Comparative Analysis on Synthetic and Biological Data

Manuel Tognon, Alisa Kumbara, Andrea Betti…·Rosalba Giugno

This study benchmarks PWM and SVM-based models for TFBS prediction using synthetic and biological data, highlighting their strengths and limitations under different conditions.

1 citation

humanChIP-seq

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