Author

Gabriela Bučeková

Masaryk UniversityORCID 0009-0000-3623-718XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Assay:protein structure· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1

Frequent Co-Authors

Radka Svobodová VařekováiD· 2 shared Tomáš SvobodaiD· 2 shared Aliaksei ChareshneuiD· 1 shared Jana PorubskáiD· 1 shared Michal Oleksik· 1 shared Michal Pajtinka· 1 shared Ondřej SchindleriD· 1 shared Viktoriia DoshchenkoiD· 1 shared

Activity by Year

2024-2025 · peak 1/yr

Co-Author Collaboration Network

9 top collaborators · 30 mutual co-author links

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2 shared papersBioinformatics

Radka Svobodová VařekováORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintNov 24, 2025

Per-residue optimisation of protein structures: Rapid alternative to optimisation with constrained alpha carbons

Ondřej Schindler, Gabriela Bučeková, Tomáš Svoboda, Radka Svobodová Vařeková

This paper introduces a method to optimise protein structures more efficiently than traditional methods, achieving results comparable to constrained alpha carbon optimisation in less time.

1 citation

protein structurestatistical model

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BioinformaticsbioRxivPreprintJun 20, 2024

Rare ring conformations in PDB: Facts or wishful thinking?

Gabriela Bučeková, Viktoriia Doshchenko, Aliaksei Chareshneu…·Radka Svobodová Vařeková

The paper analyzes ring conformations in PDB structures, finding that most are energetically favorable, while only a small fraction of unfavorable conformations are supported by experimental evidence.

DOI 10.1101/2024.06.20.598822

protein structurestatistical model

𝕏 PostBluesky