Author

Yunpeng Xia

Shanghai Jiao Tong UniversityORCID 0009-0000-7567-6978Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:deep learning· 2 Research Focus:drug response / drug discovery· 1 Research Focus:gene regulatory network inference· 1 Assay:long-read sequencing· 1 Assay:scRNA-seq· 1 Research Focus:sequence-to-function modeling· 1 Approach:transformer / foundation model· 1

Frequent Co-Authors

Shuangjia ZhengiD· 2 shared Anyue Cheng· 1 shared Chenqing HuaiD· 1 shared Dong‐Jun YuiD· 1 shared Guangye Lv· 1 shared Jack X. Chen· 1 shared Jiahao Wang· 1 shared Jiahua RaoiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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2 shared papersMolecular Biology

Shuangjia ZhengORCID

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2 papers

Recent·Most cited

Molecular BiologybioRxivPreprintMar 24, 2026

A Long-Context Generative Foundation Model Deciphers RNA Design Principles

Yanjie Huang, Guangye Lv, Anyue Cheng…·Shuangjia Zheng

EVA is a long-context generative RNA model trained on 114 million sequences, achieving state-of-the-art performance in RNA design tasks and structural modeling.

1 citation

long-read sequencingscRNA-seq

𝕏 PostBluesky

BioinformaticsbioRxivPreprintFeb 15, 2025

GerNA-Bind: Geometric-enhanced RNA-ligand Binding Specificity Prediction with Deep Learning

Yunpeng Xia, Jiayi Li, Yi-Ting Chu…·Shuangjia Zheng

GerNA-Bind predicts RNA-ligand binding specificity using a geometric deep learning framework, achieving improved precision and identifying compounds with experimentally confirmed activity against MALAT1 RNA.

2 citations

deep learningdrug response / drug discovery

𝕏 PostBluesky