Author

Matthew Galbraith

University of OxfordORCID 0009-0000-7678-9018Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1

Signature Assays, Organisms & Methods

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Approach:benchmark study· 1 Research Focus:benchmarking· 1 Organism:E. coli· 1 Assay:metagenomics· 1

Frequent Co-Authors

Liam P. ShawiD· 1 shared Nicole E StoesseriD· 1 shared Samuel LipworthiD· 1 shared Williams DavidiD· 1 shared

Activity by Year

2026-2026 · peak 1/yr

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4 top collaborators · 6 mutual co-author links

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1 shared paperBioinformatics

Liam P. ShawORCID

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1 paper

Recent·Most cited

BioinformaticsbioRxivPreprintMay 19, 2026

Benchmarking strain-level profiling of Escherichia coli in short-read gut metagenomes

Matthew Galbraith, Williams David, Liam P. Shaw…·Nicole E Stoesser

This study benchmarks six tools for strain-level profiling of E. coli in short-read gut metagenomes, showing significant variation in performance and highlighting StrainR2's high accuracy and PathoScope 2.0/StrainGE's robustness in unknown strain scenarios.

DOI 10.64898/2026.05.19.726160

E. colimetagenomics

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