Author

Qingyuan Cai

Columbia UniversityORCID 0009-0000-9391-2305Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:human· 2 Research Focus:benchmarking· 1 Assay:ChIP-seq· 1 Approach:deep learning· 1 Assay:DNA methylation· 1 Research Focus:gene regulatory network inference· 1 Assay:scRNA-seq· 1 Approach:statistical model· 1

Frequent Co-Authors

Raúl RabadániD· 2 shared Abdullah Naqvi· 1 shared Anna Schoonen· 1 shared Arnold J. LevineiD· 1 shared Elham AziziiD· 1 shared Hannah Khanshali· 1 shared Jonathan GuoiD· 1 shared José L. McFaline‐FigueroaiD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

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2 shared papersMolecular Biology

Raúl RabadánORCID

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2 papers

Recent·Most cited

Molecular BiologybioRxivPreprintSep 28, 2026

Nucleosome-scale p53-hormone receptor grammar distributed by Alu elements

Xi Fu, Qingyuan Cai, Pranay Satya…·Arnold J. Levine

The paper identifies p53-hormone receptor regulatory grammars distributed by Alu elements in mammary and muscle cells, with implications for breast cancer and muscle aging.

DOI 10.64898/2026.09.26.754600

humanDNA methylation

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GenomicsbioRxivPreprintFeb 28, 2026

Mapping kinase-dependent tumor immune adaptation with multiplexed single-cell CRISPR screens

Lingting Shi, Ross M. Giglio, Qingyuan Cai…·José L. McFaline‐Figueroa

The paper develops a CRISPR screening framework to map kinase-dependent immune evasion mechanisms in glioblastoma by integrating single-cell transcriptomics and deep generative models.

2 citations

humanscRNA-seq

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