Author

Shosuke Suzuki

University of TsukubaORCID 0009-0001-3354-195XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Approach:deep learning· 2 Assay:protein structure· 2 Research Focus:protein structure prediction· 2 Approach:benchmark study· 1 Approach:diffusion model· 1 Organism:human· 1 Approach:transformer / foundation model· 1

Frequent Co-Authors

Toshiyuki AmagasaiD· 2 shared

Activity by Year

2026-2026 · peak 2/yr

2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintAug 9, 2026

✦ In-depth digest

Biasing Conformational Sampling in AlphaFold 3 and Boltz-2 via Pair Representation Scaling

Shosuke Suzuki, Toshiyuki Amagasa

Multiplying the AlphaFold 3 or Boltz-2 pair representation by a single scalar (1+β) at the Pairformer input, without retraining, broadens sampled ensembles toward alternative states across 86 two-state targets.

3 citations

protein structuredeep learning

𝕏 PostBluesky

BioinformaticsbioRxivPreprintMay 17, 2026

ConforFlux: Particle-Guided Trunk Repulsion for Diverse Protein Conformations

Shosuke Suzuki, Toshiyuki Amagasa

ConforFlux enhances protein structure prediction by sampling diverse conformations through trunk repulsion, improving success rates and coverage across multiple models and targets.

DOI 10.64898/2026.05.16.725138

humanprotein structure

𝕏 PostBluesky