Marçal Vázquez-Valls

The paper evaluates clustering and assembly methods for Iso-Seq data in non-model animals without reference genomes, finding CD-HIT at 99% similarity provides the best transcriptome quality.

This paper introduces FANTASIA, a tool using protein language models to annotate functions for thousands of animal proteomes, uncovering previously unknown functions across species.

MATEdb2 provides high-quality proteomes for nearly 1000 animal species to enhance phylogenomic research by reducing computational effort and standardizing data formats.