Ana Maria Rojas

The paper investigates the evolution of CTCF's role in chromatin organization across species, finding that vertebrate CTCF enables loop extrusion but requires additional factors for full genome architecture.

This paper introduces FANTASIA, a tool using protein language models to annotate functions for thousands of animal proteomes, uncovering previously unknown functions across species.

This study compares protein language models and deep learning methods for decoding functional information from proteomes of model organisms, finding language models more precise and informative.