Author

Chuan Ye

Peking UniversityORCID 0009-0001-3886-9567Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Approach:benchmark study· 1 Assay:bulk RNA-seq· 1 Assay:ChIP-seq· 1 Assay:CUT&Tag· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1

Frequent Co-Authors

Chenyang WuiD· 2 shared Dongyu ZhaoiD· 2 shared Chengyu SuniD· 1 shared Hansen ChengiD· 1 shared Shaodong Huang· 1 shared Yunxi LiaoiD· 1 shared Ziyan RaoiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

7 top collaborators · 15 mutual co-author links

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2 shared papersBioinformatics

Chenyang WuORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintOct 14, 2026

Evidence-resolved benchmarks separate biological context recognition from direct-partner specificity in protein interaction models

Hansen Cheng, Chengyu Sun, Chuan Ye…·Dongyu Zhao

The paper benchmarks protein interaction models to distinguish direct partners from non-binding or noncontacting proteins, showing that context recognition and direct specificity are separable capabilities.

DOI 10.64898/2026.10.07.757219

protein structurestatistical model

𝕏 PostBluesky

BioinformaticsSmall MethodsPeer-reviewedMay 23, 2025

POCALI: Prediction and insight On CAncer LncRNAs by Integrating multi-omics data with machine learning

Ziyan Rao, Chenyang Wu, Yunxi Liao…·Dongyu Zhao

POCALI identifies cancer lncRNAs by integrating 44 multi-omics features, showing improved sensitivity and strong associations with cancer phenotypes.

3 citations

bulk RNA-seqDNA methylation

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