BioinformaticsbioRxivPreprint
Evidence-resolved benchmarks separate biological context recognition from direct-partner specificity in protein interaction models
Hansen Cheng, Chengyu Sun, Chuan Ye…·Dongyu Zhao
The paper benchmarks protein interaction models to distinguish direct partners from non-binding or noncontacting proteins, showing that context recognition and direct specificity are separable capabilities.
DOI 10.64898/2026.10.07.757219