Yuan Gao

This paper introduces simpleaf, a tool for efficient sub-gene-level quantification of probe-based single-cell data, showing improved speed and memory use compared to existing tools.

QCatch provides a standardized QC reporting framework for single-cell sequencing data, generating interactive HTML reports and annotated H5AD files for downstream analysis.

Forseti predicts the splicing status of scRNA-seq reads by combining binding affinity and fragment length models, improving accuracy in downstream analyses.