Author

Yih-An Chen

University of California, San FranciscoORCID 0009-0001-7767-8464Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 2

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Organism:human· 2 Assay:scRNA-seq· 2 Research Focus:benchmarking· 1 Research Focus:clustering· 1 Approach:statistical model· 1 Approach:transformer / foundation model· 1

Frequent Co-Authors

Franklin W. HuangiD· 2 shared Hanbing SongiD· 2 shared Jon AkutagawaiD· 2 shared Julia H. PhamiD· 2 shared Arda Demirci· 1 shared Brendan Lapointe RaizenneiD· 1 shared Christopher M. HeaphyiD· 1 shared Ezequiel Goldschmidt· 1 shared

Activity by Year

2023-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 40 mutual co-author links

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2 shared papersGenomics

Franklin W. HuangORCID

Mutual co-authors in cluster

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2 papers

Recent·Most cited

GenomicsbioRxivPreprintMar 27, 2026

A single-cell and spatial atlas of prostate cancer reveals the combinatorial nature of gene modules underlying lineage plasticity and metastasis

Hanbing Song, Junxiang Xu, Keila Velázquez-Arcelay…·Franklin W. Huang

The paper constructs a single-cell and spatial atlas of prostate cancer to reveal gene modules driving lineage plasticity and metastasis, identifying new biological insights and a transformer-based model for cell-state classification.

3 citations

humanscRNA-seq

𝕏 PostBluesky

GenomicsbioRxivPreprintNov 6, 2023

Single cell transcriptional profiling of benign prostatic hyperplasia reveals a progenitor-like luminal epithelial cell state within an inflammatory microenvironment

Rei Unno, Jon Akutagawa, Hanbing Song…·Thomas Chi

This study uses single-cell RNA-seq to identify a luminal progenitor cell state in BPH linked to inflammation and MIF interactions.

2 citations

humanscRNA-seq

𝕏 PostBluesky