Author

Arda Demirci

University of California, San Francisco

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Organism:human· 1 Assay:scRNA-seq· 1 Approach:transformer / foundation model· 1

Frequent Co-Authors

Brendan Lapointe RaizenneiD· 1 shared Christopher M. HeaphyiD· 1 shared Ezequiel Goldschmidt· 1 shared Franklin W. HuangiD· 1 shared Hanbing SongiD· 1 shared Hannah N. W. WeinsteiniD· 1 shared Isaac Salzman· 1 shared Jon AkutagawaiD· 1 shared

Activity by Year

2026-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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1 shared paperGenomics

Brendan Lapointe RaizenneORCID

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1 paper

Recent·Most cited

A single-cell and spatial atlas of prostate cancer reveals the combinatorial nature of gene modules underlying lineage plasticity and metastasis

Hanbing Song, Junxiang Xu, Keila Velázquez-Arcelay, Arda Demirci, Brendan Lapointe Raizenne, Sarah C. Hsu, Joshua Choi, Julia H. Pham, Yih-An Chen, Hannah N. W. Weinstein, Isaac Salzman, Margaret Tsui, Jon Akutagawa, Wisdom Adingo, Ezequiel Goldschmidt, , Franklin W. Huang

The paper constructs a single-cell and spatial atlas of prostate cancer to reveal gene modules driving lineage plasticity and metastasis, identifying new biological insights and a transformer-based model for cell-state classification.

bioRxiv · Mar 27, 2026 · PreprintGenomics