Author

Shuang Li

Ludwig-Maximilians-Universität MünchenORCID 0009-0001-7932-9436Unclaimed ORCID profile · follow to get notified of new preprints

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Shuang Li3 papers · Tsinghua University

Biology Disciplines

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Molecular Biology· 2

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Assay:scRNA-seq· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Adam P. CribbsiD· 2 shared Jianfeng SuniD· 2 shared Stefan CanzariD· 2 shared

Activity by Year

2025-2025 · peak 2/yr

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3 top collaborators · 3 mutual co-author links

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2 shared papersMolecular Biology

Adam P. CribbsORCID

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2 papers

Recent·Most cited

Molecular BiologybioRxivPreprintMar 15, 2025

UMIche: A platform for robust UMI-centric simulation and analysis in bulk and single-cell sequencing

Jianfeng Sun, Shuang Li, Stefan Canzar, Adam P. Cribbs

UMIche provides a unified platform for UMI-centric simulation and analysis in bulk and single-cell sequencing to improve molecular quantification accuracy.

DOI 10.1101/2025.03.15.643072

bulk RNA-seqscRNA-seq

𝕏 PostBluesky

Molecular BiologybioRxivPreprintMar 15, 2025

mclUMI: Markov clustering of unique molecular identifiers enables dynamic removal of PCR duplicates

Jianfeng Sun, Shuang Li, Stefan Canzar, Adam P. Cribbs

mclUMI improves UMI deduplication by using Markov clustering to dynamically remove PCR duplicates, outperforming existing methods in noisy sequencing conditions.

DOI 10.1101/2025.03.15.643033

statistical model

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