Author

Souparna Purohit

University of PennsylvaniaORCID 0009-0001-8762-6545Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Assay:bulk RNA-seq· 2 Approach:statistical model· 2 Organism:mouse· 1

Frequent Co-Authors

Gregory R. GrantiD· 2 shared Thomas G. BrooksiD· 2 shared Amruta S. NaikiD· 1 shared Antonijo Mrčela· 1 shared Emanuela RicciottiiD· 1 shared J. S. YangiD· 1 shared Nicholas F. LahensiD· 1 shared Peter S. ChoiiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

9 top collaborators · 36 mutual co-author links

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2 shared papersBioinformatics

Gregory R. GrantORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintOct 15, 2026

A Benchmark of Unsupervised Circadian Phase Inference Methods for Bulk Transcriptomic Data

Souparna Purohit, Gregory R. Grant, Thomas G. Brooks

This study benchmarks unsupervised circadian phase inference methods on bulk transcriptomic data, finding CHIRAL performs best with lower error than other methods.

DOI 10.64898/2026.10.08.757747

mousebulk RNA-seq

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BioinformaticsbioRxivPreprintJan 30, 2025

Sources of non-uniform coverage in short-read RNA-Seq data

Thomas G. Brooks, Nicholas F. Lahens, Antonijo Mrčela…·Gregory R. Grant

This study investigates sources of non-uniform coverage in RNA-Seq data and finds that no single factor explains the issue, contradicting prior claims.

1 citation

bulk RNA-seqstatistical model

𝕏 PostBluesky