Author

Siyu Tao

ShanghaiTech UniversityORCID 0009-0002-1139-487XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:deep learning· 2 Research Focus:benchmarking· 1 Approach:contrastive learning· 1 Research Focus:drug response / drug discovery· 1 Approach:graph neural network· 1 Assay:protein sequence· 1

Frequent Co-Authors

Jie ZhengiD· 2 shared Yimiao FengiD· 2 shared Min WuiD· 1 shared Xin Liu· 1 shared Yang Yang· 1 shared Yang YangiD· 1 shared

Activity by Year

2025-2025 · peak 2/yr

Co-Author Collaboration Network

6 top collaborators · 11 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersBioinformatics

Jie ZhengORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

BioinformaticsIEEE Transactions on Computational Biology and BioinformaticsPeer-reviewedOct 6, 2025

Learning universal knowledge graph embedding for predicting biomedical pairwise interactions

Siyu Tao, Yang Yang, Xin Liu…·Jie Zheng

This paper introduces LukePi, a self-supervised pre-training framework for GNNs on biomedical knowledge graphs, which improves link prediction in low-data and distribution-shift scenarios.

4 citations

deep learningcontrastive learning

𝕏 PostBluesky

BioinformaticsbioRxivPreprintApr 20, 2025

MiT4SL: multi-omics triplet representation learning for cancer cell line-adapted prediction of synthetic lethality

Siyu Tao, Yimiao Feng, Yang Yang…·Jie Zheng

MiT4SL predicts synthetic lethality in cancer cell lines using multi-omics triplet representation learning, outperforming existing models in cell line-adapted scenarios.

4 citations

protein sequencedeep learning

𝕏 PostBluesky