Author

Swapnesh Panigrahi

Centre National de la Recherche ScientifiqueORCID 0009-0002-2811-1004Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Microbiology· 2 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:deep learning· 2 Approach:statistical model· 2 Organism:bacteria (other)· 1 Assay:bulk RNA-seq· 1 Assay:ChIP-seq· 1 Research Focus:chromatin & epigenetic regulation· 1 Research Focus:clustering· 1 Assay:Hi-C· 1

Frequent Co-Authors

Mireille AnsaldiiD· 2 shared Nicolas GinetiD· 2 shared Corina Pascal· 1 shared Fares Osam Yáñez-CunaiD· 1 shared Géraldine LalouxiD· 1 shared Jovana KaljevićiD· 1 shared Julián BulssicoiD· 1 shared Ngat T. TraniD· 1 shared

Activity by Year

2024-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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2 shared papersGenomics

Mireille AnsaldiORCID

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Author profile →

3 papers

Recent·Most cited

Dynamics and interplay of gene expression and chromosome organization across a predatory lifecycle

Renske van Raaphorst, Fares Osam Yáñez-Cuna, Corina Pascal, Ngat T. Tran, Jovana Kaljević, Swapnesh Panigrahi, Tung B. K. Le, Romain Koszul, Géraldine Laloux

This study maps transcriptional activity and chromosome architecture in Bdellovibrio bacteriovorus across its predatory lifecycle stages using multi-omics approaches.

bioRxiv · Sep 24, 2025 · PreprintMicrobiology

HieVi: Protein Large Language Model for proteome-based phage clustering

Swapnesh Panigrahi, Mireille Ansaldi, Nicolas Ginet

HieVi uses a protein language model to cluster bacteriophages into a hierarchical taxonomy, aligning with ICTV classifications and capturing evolutionary relationships.

bioRxiv · Dec 17, 2024 · PreprintGenomics

Antibiotic-Induced Morphological Changes Enhance Phage Predation: A Mathematical Model of Plaque Formation in Structured Environments

Julián Bulssico, Swapnesh Panigrahi, Nicolas Ginet, Mireille Ansaldi

This paper develops a mathematical model showing that antibiotic-induced morphological changes in bacteria enhance phage predation and plaque size in structured environments.

bioRxiv · Sep 11, 2024 · PreprintMicrobiology