Author

Alicia Clarke

Forestry and Agricultural Biotechnology InstituteORCID 0009-0002-7455-0411Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Plant Biology· 2

Signature Assays, Organisms & Methods

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Organism:plant (other)· 2 Research Focus:cell type annotation· 1 Approach:deep learning· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Approach:machine learning (classical)· 1 Assay:protein structure· 1 Research Focus:protein structure prediction· 1

Frequent Co-Authors

Noëlani van den BergiD· 2 shared Alicia Vermeulen· 1 shared Aureliano BombarelyiD· 1 shared Jacobus Lukas Marthinus Fick· 1 shared Robert BackeriD· 1 shared Velushka SwartiD· 1 shared

Activity by Year

2025-2025 · peak 2/yr

Co-Author Collaboration Network

6 top collaborators · 9 mutual co-author links

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2 shared papersPlant Biology

Noëlani van den BergORCID

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2 papers

Recent·Most cited

Plant BiologybioRxivPreprintOct 28, 2025

The avocado pangenome reveals dynamic clustering and lineage-specific diversity of NLR genes

Robert Backer, Alicia Clarke, Alicia Vermeulen…·Noëlani van den Berg

The paper presents an avocado pangenome and analyzes NLR gene diversity across lineages, revealing lineage-specific expansions and structural variants.

1 citation

plant (other)whole-genome sequencing

𝕏 PostBluesky

Plant BiologyThe Plant JournalPeer-reviewedApr 1, 2025

What NLR you recognizing? Predicted binding affinities- and energies may be used to identify novel NLR-effector interactions

Alicia Fick, Jacobus Lukas Marthinus Fick, Velushka Swart, Noëlani van den Berg

This study predicts NLR-effector interactions using AlphaFold2-Multimer and machine learning models, identifying novel interactions with high accuracy.

16 citationstop 2%

plant (other)protein structure

𝕏 PostBluesky