David M Redd

This paper introduces scJDO2, a method to separate score and flow operators from single-cell time courses, evaluating their ability to identify unstable cells and bifurcations in hematopoiesis.

This paper introduces scJDO, a framework for analyzing dynamical sensitivity during cell-state transitions, and applies it to iPSC reprogramming to distinguish productive from diverted fates.

This paper introduces a unified dynamical-systems and control-theoretic model to predict single-cell fate dynamics by integrating pseudotime, RNA velocity, optimal transport, and stochastic trajectories under partial observability.