Author

Ahmet Sarıgün

Max Delbrück CenterORCID 0009-0003-2715-5344Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Assay:proteomics· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell-cell communication· 1 Assay:ChIP-seq· 1 Research Focus:database / resource· 1 Approach:deep learning· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Ahmet Süreyya RifaioğluiD· 1 shared Altuna AkaliniD· 1 shared Bernd BodenmilleriD· 1 shared Bora UyariD· 1 shared Deniz Germen· 1 shared Egle-Helene ErviniD· 1 shared Jovan TanevskiiD· 1 shared Julio Sáez-RodrígueziD· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperBioinformatics

Ahmet Süreyya RifaioğluORCID

Mutual co-authors in cluster

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintFeb 3, 2026

SpaCEy: Discovery of Functional Spatial Tissue Patterns by Association with Clinical Features Using Explainable Graph Neural Networks

Ahmet Süreyya Rifaioğlu, Egle-Helene Ervin, Ahmet Sarıgün…·Julio Sáez-Rodríguez

SpaCEy identifies spatial tissue patterns linked to clinical outcomes using explainable graph neural networks in proteomic cancer data.

DOI 10.64898/2025.12.12.693857

humanspatial transcriptomics

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BioinformaticsbioRxivPreprintJul 16, 2024

Flexynesis: A deep learning framework for bulk multi-omics data integration for precision oncology and beyond

Bora Uyar, Taras Savchyn, Ricardo Wurmus…·Altuna Akalin

Flexynesis provides a versatile deep learning framework for integrating bulk multi-omics data, offering usability, adaptability, and benchmarking across diverse datasets.

2 citations

bulk RNA-seqDNA methylation

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