Author

Deniz Germen

Middle East Technical University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1

Signature Assays, Organisms & Methods

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Research Focus:cell-cell communication· 1 Research Focus:differential expression· 1 Research Focus:drug response / drug discovery· 1 Approach:experimental assay· 1 Approach:graph neural network· 1 Organism:human· 1 Assay:proteomics· 1 Assay:spatial transcriptomics· 1

Frequent Co-Authors

Ahmet SarıgüniD· 1 shared Ahmet Süreyya RifaioğluiD· 1 shared Bernd BodenmilleriD· 1 shared Egle-Helene ErviniD· 1 shared Jovan TanevskiiD· 1 shared Julio Sáez-RodrígueziD· 1 shared

Activity by Year

2026-2026 · peak 1/yr

Co-Author Collaboration Network

6 top collaborators · 15 mutual co-author links

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1 shared paperBioinformatics

Ahmet SarıgünORCID

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1 paper

Recent·Most cited

SpaCEy: Discovery of Functional Spatial Tissue Patterns by Association with Clinical Features Using Explainable Graph Neural Networks

Ahmet Süreyya Rifaioğlu, Egle-Helene Ervin, Ahmet Sarıgün, Deniz Germen, Bernd Bodenmiller, Jovan Tanevski, Julio Sáez-Rodríguez

SpaCEy identifies spatial tissue patterns linked to clinical outcomes using explainable graph neural networks in proteomic cancer data.

bioRxiv · Feb 3, 2026 · PreprintBioinformatics