Rahul Varki

SIFT selects reference haplotypes for genome patching using compressed indexing and pseudo-MEM queries to improve T2T imputation efficiency.

This paper introduces an algorithmic framework for comparing and sorting RLZ compressed sequences, achieving speedups over character-based sorting.

The paper introduces PBML, an algorithm for efficiently detecting long-range shared ancestry tracts in large haplotype panels by filtering short, uninformative matches.

The paper introduces RLZ-RePair, a method that combines RLZ parsing with RePair to create efficient grammar-based compression with reduced memory usage and comparable performance to standard RePair.

This paper introduces Re2Pair, a modified RePair algorithm that reduces memory usage and improves speed for compressing large genomic datasets.