Author

Dorottya Nagy‐Szakal

SUNY Downstate Health Sciences UniversityORCID 0009-0003-5972-6973Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Microbiology· 2 Bioinformatics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Organism:human· 3 Approach:machine learning (classical)· 2 Research Focus:variant calling· 2 Assay:bulk RNA-seq· 1 Assay:DNA methylation· 1 Research Focus:drug response / drug discovery· 1 Approach:experimental assay· 1 Organism:mouse· 1

Frequent Co-Authors

Christopher E. MasoniD· 4 shared David DankoiD· 4 shared Heather WellsiD· 4 shared Niamh B. O’HaraiD· 4 shared John C Papciak· 3 shared Mara Couto-RodrigueziD· 3 shared Gábor Fidler· 2 shared Lorenzo Uccellini· 2 shared

Activity by Year

2021-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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Curved chords = mutual co-authorship

4 shared papersMicrobiology

Christopher E. MasonORCID

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

MicrobiologybioRxivPreprintMay 13, 2026

BIOTIA-DX RESISTANCE Achieved the Best Antimicrobial Resistance Phenotype Prediction Accuracy at CAMDA 2026

Gábor Fidler, Heather Wells, Patrick Ford Combs…·David Danko

The paper introduces BDXR, a method for antimicrobial resistance prediction, achieving high accuracy across six species-drug pairs in the CAMDA 2026 challenge.

DOI 10.64898/2026.05.13.724982

humanDNA methylation

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MicrobiologybioRxivPreprintSep 24, 2025

BIOTIA-DX RESISTANCE Achieved the Best Antimicrobial Resistance Phenotype Prediction Accuracy at CAMDA 2025

Gábor Fidler, Heather Wells, Patrick Ford Combs…·David Danko

The paper introduces BDXR, a tool for predicting antimicrobial resistance from whole genome sequencing, achieving high accuracy in the CAMDA 2025 challenge.

1 citation

humanmouse

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BioinformaticsbioRxivPreprintMar 12, 2024

Forecasting Dengue Fever in Brazil Using Multimodal Data, Including Climate Data

David Danko, Charles J Vörösmarty, Anthony Daniel Cak…·Niamh B. O’Hara

This paper introduces a dengue fever forecasting model for Brazil using multimodal data, achieving accurate monthly predictions up to 6 months ahead.

2 citations

statistical model

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Molecular BiologyNature CommunicationsPeer-reviewedMar 12, 2021

Shotgun Transcriptome and Isothermal Profiling of SARS-CoV-2 Infection Reveals Unique Host Responses, Viral Diversification, and Drug Interactions

Daniel Butler, Christopher Mozsary, Cem Meydan…·Christopher E. Mason

This study uses rapid diagnostics and metatranscriptomics to analyze SARS-CoV-2 infection, revealing viral evolution, host responses, and drug interactions in NYC samples.

201 citationstop 1%

humanbulk RNA-seq

𝕏 PostBluesky