Author

Jan Dirks

University Hospital of BaselORCID 0009-0003-7002-5932Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Signature Assays, Organisms & Methods

Click to filter · or open tag

Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Assay:CITE-seq· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Research Focus:dimensionality reduction· 1 Organism:human· 1 Research Focus:imputation· 1

Frequent Co-Authors

Alexander BeckeriD· 1 shared Artemy BakuliniD· 1 shared Can ErgeniD· 1 shared Corinne C. WidmeriD· 1 shared Diana Ditz· 1 shared Florian IngelfingeriD· 1 shared Ido AmitiD· 1 shared Jonas MaaskolaiD· 1 shared

Activity by Year

2025-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

1 shared paperBioinformatics

Alexander BeckerORCID

Mutual co-authors in cluster

Author profile →

1 paper

Recent·Most cited

BioinformaticsbioRxivPreprintSep 7, 2025

CytoVI: Deep generative modeling of antibody-based single cell technologies

Florian Ingelfinger, Nathan Levy, Can Ergen…·Nir Yosef

CytoVI is a deep generative model for antibody-based single cell technologies that improves integration, imputation, and analysis across different platforms and antibody panels.

4 citations

humanCITE-seq

𝕏 PostBluesky