Author

Nongfei Sheng

Umeå UniversityORCID 0009-0004-0642-3394Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Signature Assays, Organisms & Methods

Click to filter · or open tag

Organism:human· 3 Assay:metagenomics· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Approach:deep learning· 1

Frequent Co-Authors

Nicklas StrömbergiD· 3 shared Adel F. AlharbiiD· 1 shared Anders Esberg· 1 shared Arthur StenlundiD· 1 shared Carina KälleståliD· 1 shared Chetan SharafiD· 1 shared Chinmay Kumar DwibediiD· 1 shared Edward J. HolloxiD· 1 shared

Activity by Year

2019-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 19 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

3 shared papersMicrobiology

Nicklas StrömbergORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

MicrobiologybioRxivPreprintJun 20, 2025

Scalable single-cell metagenomic analysis with Bascet and Zorn

Hadrien Gourlé, Iryna Yakovenko, Jyoti Verma…·Johan Henriksson

This paper introduces Bascet and Zorn, tools for scalable single-cell metagenomic analysis, demonstrating their utility on mock and human saliva samples.

1 citation

humanscRNA-seq

𝕏 PostBluesky

GeneticsbioRxivPreprintOct 29, 2021

Maintenance of copy number variation at the human salivary agglutinin gene (DMBT1) by balancing selection driven by host-microbe interactions

Adel F. Alharbi, Nongfei Sheng, Katie Nicol…·Edward J. Hollox

The paper identifies balancing selection at the DMBT1 gene driven by host-microbe interactions through expression analysis and long-range transcript sequencing.

DOI 10.1101/2021.10.29.466477

humanbulk RNA-seq

𝕏 PostBluesky

MicrobiologybioRxivPreprintJan 7, 2019

Dynamics, cariogenicity, and geographic distribution of Streptococcus mutans adhesin types suggest adaptation to individual hosts

Nongfei Sheng, Anders Esberg, Lena Mårell…·Nicklas Strömberg

The paper tracks the stability and geographic distribution of Streptococcus mutans adhesin types over 5 years and links specific subtypes to increased caries risk.

DOI 10.1101/514265

humanmetagenomics

𝕏 PostBluesky