Author

Grace Oualline

Carnegie Mellon UniversityORCID 0009-0004-2486-7220Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Organism:bacteria (other)· 1 Approach:deep learning· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Assay:protein sequence· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Alejandro BarreraiD· 1 shared Ali HassaniD· 1 shared Arjun Devadas VasanthakumariiD· 1 shared Beniamin KrupkiniD· 1 shared Christina A. BoucheriD· 1 shared Jonathan D. RoseniD· 1 shared Kilian SalomoniD· 1 shared Mackenzie NooniD· 1 shared

Activity by Year

2026-2026 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 28 mutual co-author links

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1 shared paperGenomics

Alejandro BarreraORCID

Mutual co-authors in cluster

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3 papers

Recent·Most cited

BioinformaticsbioRxivPreprintOct 20, 2026

Bypassing Current Biosecurity Screens with AI Designed Proteins and Closing the Gap with Edge-AI Functional Screening

Mackenzie Noon, Grace Oualline

The paper introduces Capiti, an edge-deployed system that detects pathogenic protein function during DNA synthesis by analyzing valve control signals, outperforming existing sequence-based screening tools.

DOI 10.64898/2026.10.14.759233

protein sequencedeep learning

BioinformaticsbioRxivPreprintOct 8, 2026

Approximate local alignment via chained MEM divergence estimation for detecting horizontal gene transfer

Grace Oualline, Sakshi Pandey, Xiaolei Brian Zhang…·Yun William Yu

alamem and alasight are tools for fast and memory-efficient local alignment and horizontal gene transfer detection in bacterial genomes.

DOI 10.64898/2026.10.01.756044

bacteria (other)whole-genome sequencing

GenomicsGenome ResearchPeer-reviewedSep 1, 2026

Uniform processing and analysis of IGVF massively parallel reporter assay data with MPRAsnakeflow

Jonathan D. Rosen, Arjun Devadas Vasanthakumari, Kilian Salomon…·Max Schubach

The paper introduces standardized formats and tools for processing MPRA data to improve reproducibility and integration across studies.

2 citations

humanexperimental assay