Author

Haim Krupkin

Bar-Ilan UniversityORCID 0009-0004-3164-0243Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:human· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Research Focus:drug response / drug discovery· 1

Frequent Co-Authors

Alexander DerryiD· 1 shared Alp TarticiiD· 1 shared Eli EisenbergiD· 1 shared Erez Y. LevanoniD· 1 shared Itamar TwerskyiD· 1 shared Roni Cohen‐FultheimiD· 1 shared Russ Biagio AltmaniD· 1 shared Shalom Hillel RothiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

8 top collaborators · 13 mutual co-author links

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1 shared paperBioinformatics

Alexander DerryORCID

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2 papers

Recent·Most cited

A Cytoplasmic Index for Quantifying Immune-Related A-to-I RNA Editing

Roni Cohen‐Fultheim, Itamar Twersky, Haim Krupkin, Shalom Hillel Roth, Erez Y. Levanon, Eli Eisenberg

The paper introduces the Cytoplasmic Editing Index (CEI) to quantify immune-relevant A-to-I RNA editing in cytoplasmic transcripts, showing improved sensitivity and specificity over global indices.

Genome biology · Jun 17, 2026Peer-reviewedGenomics

Unsupervised learning reveals landscape of local structural motifs across protein classes

Alexander Derry, Haim Krupkin, Alp Tartici, Russ Biagio Altman

The paper uses self-supervised deep learning to cluster local 3D protein structures, creating a motif lexicon that improves structure prediction, drug off-target prediction, and variant analysis.

Bioinformatics · Jun 26, 2025Peer-reviewedBioinformatics