Author

Harika Ürel

Helmholtz MunichORCID 0009-0004-3732-4858Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:human· 2 Assay:metagenomics· 2 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Organism:E. coli· 1 Assay:long-read sequencing· 1

Frequent Co-Authors

Ela SauerborniD· 2 shared Lara UrbaniD· 2 shared Michael BiggeliD· 2 shared Tim ReskaiD· 2 shared Albert PerlasiD· 1 shared Constanza B. VenegasiD· 1 shared Ebenezer Foster-NyarkoiD· 1 shared Edward J MartiniD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

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2 shared papersGenomics

Ela SauerbornORCID

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2 papers

Recent·Most cited

GenomicsMicrobial GenomicsPeer-reviewedSep 21, 2026

Nanopore metagenomic sequencing links clinically relevant resistance determinants to pathogens

Harika Ürel, Ela Sauerborn, Michael Biggel…·Lara Urban

This paper develops a method to link plasmid-encoded AMR genes to their bacterial hosts using nanopore sequencing methylation data, achieving high accuracy in clinical samples.

2 citations

humanmetagenomics

𝕏 PostBluesky

BioinformaticsGigaSciencePeer-reviewedJan 1, 2025

Nanopore- and AI-empowered microbial viability inference

Harika Ürel, Sabrina Benassou, Hanna Marti…·Lara Urban

This paper introduces a computational framework using nanopore sequencing and deep learning to infer microbial viability from raw signal data, showing high accuracy in controlled and real-world applications.

10 citations

E. colihuman

𝕏 PostBluesky