Balakumaran Balasubramaniyan

Large-scale analysis of ligand binding mode similarities in the PDB using interaction fingerprints

This study introduces ECIFP, a method to analyze ligand binding modes in the PDB, showing it can identify similar binding sites and detect binding-mode similarities across diverse ligands.

Linking protein residues in literature and structure

The paper introduces a tool that links protein residue mentions in text to their corresponding positions in protein structures, enabling integrated exploration with experimental evidence.