Author

Adam Midlik

European Bioinformatics InstituteORCID 0000-0003-0455-2235Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Assay:protein structure· 2 Approach:statistical model· 2 Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Organism:mouse· 1

Frequent Co-Authors

Balakumaran BalasubramaniyaniD· 1 shared Ibrahim Roshan KunnakkattuiD· 1 shared Jaroslav KočaiD· 1 shared Jennifer R. FlemingiD· 1 shared Karel BerkaiD· 1 shared Preeti ChoudharyiD· 1 shared Radka Svobodová VařekováiD· 1 shared Sameer S VelankariD· 1 shared

Activity by Year

2021-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperBioinformatics

Balakumaran BalasubramaniyanORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintApr 21, 2026

Large-scale analysis of ligand binding mode similarities in the PDB using interaction fingerprints

Ibrahim Roshan Kunnakkattu, Preeti Choudhary, Adam Midlik…·Sameer S Velankar

This study introduces ECIFP, a method to analyze ligand binding modes in the PDB, showing it can identify similar binding sites and detect binding-mode similarities across diverse ligands.

DOI 10.64898/2026.04.17.719144

protein structurestatistical model

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BioinformaticsScientific ReportsPeer-reviewedJun 11, 2021

Uncovering of Cytochrome P450 Anatomy by SecStrAnnotator

Adam Midlik, Veronika Navrátilová, Taraka Ramji Moturu…·Karel Berka

The paper analyzes the secondary structure anatomy of cytochrome P450 proteins using a workflow that identifies equivalent SSE groups and their properties.

31 citations

bacteria (other)human

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