Author
University of HoustonORCID 0009-0004-4779-8125Unclaimed ORCID profile · follow to get notified of new preprints
Mutual co-authors in cluster
4 papers
Recent·Most cited
Humaira Anzum, Veena Kochat, Md Ishtyaq Mahmud…·Tania Banerjee
This paper introduces a counterfactual framework to analyze directional cell-cell interactions in spatial transcriptomics, identifying significant asymmetric influences between tumor, immune, and stromal compartments in cholangiocarcinoma tissue.
Md Ishtyaq Mahmud, Veena Kochat, Humaira Anzum…·Tania Banerjee
The paper introduces an ambiguity-aware framework for spatial cell-type annotation, reducing cluster and cell-level ambiguity in cholangiocarcinoma data.
Md Ishtyaq Mahmud, Veena Kochat, Humaira Anzum…·Tania Banerjee
NanoCellAnnotator improves spatial transcriptomics cell-type annotation by combining biological constraints and LLMs, identifying canonical cell populations and flagging ambiguous clusters.
Jagan Mohan Reddy Dwarampudi, Veena Kochat, Suresh Satpati…·Tania Banerjee
The paper develops a framework to integrate spatial transcriptomics with single-cell multiome data to infer spatially resolved regulatory programs in melanoma.