Parapipe: a Pipeline for Handling Parasite NGS Datasets and its Application to Cryptosporidium
Arthur Morriss, Guy Robinson, Rachel M. Chalmers, Simone M. Cacciò, Thomas R. Connor
Parapipe is a bioinformatics pipeline for analyzing Cryptosporidium NGS data, enabling variant calling, MOI analysis, and phylogenomic clustering to improve public health surveillance.
bioRxiv · Jan 16, 2025 · PreprintBioinformatics