Kalinka Sand Knudsen

The paper constructs a global genome catalog of 53,501 long-read MAGs from activated sludge, representing 12,047 prokaryotic species and enabling analysis of functional traits and ecological roles in wastewater treatment systems.

The paper investigates the distribution, diversity, and metabolic potential of Myxococcota bacteria across Danish environments using metagenomic data, revealing their ecological roles and biotechnological potential.

The paper presents a national study of methanotroph diversity and distribution in Denmark, revealing uncharacterised species as dominant in natural ecosystems and highlighting potential targets for methane mitigation.

Microflora Danica compiles 10,686 shotgun metagenomes and 449 rRNA datasets to create an atlas of Danish environmental microbiomes, revealing hidden homogeneity and novel nitrifiers.

This study identifies aerotrophy as a primary energy source in caves, revealing microbial use of atmospheric trace gases for continuous primary production.

This study uses long-read sequencing and optimized bioinformatics to recover high-quality microbial genomes from soil and sediment samples, revealing over 15,000 novel prokaryotic species and expanding microbial community characterization.