Author

Karolina Sienkiewicz

University of VirginiaORCID 0009-0004-7424-8989Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:human· 3 Approach:statistical model· 3 Research Focus:variant calling· 2 Assay:whole-genome sequencing· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Aakrosh RataniD· 2 shared Adetola AbdulkadiriD· 1 shared Adrián Muñoz‐BarreraiD· 1 shared Ajay ChatrathiD· 1 shared Alexey KolesnikoviD· 1 shared Andrew W. CarrolliD· 1 shared Arun VisvanathiD· 1 shared Bryan R. LajoieiD· 1 shared

Activity by Year

2020-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 23 mutual co-author links

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2 shared papersBioinformatics

Aakrosh RatanORCID

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3 papers

Recent·Most cited

BioinformaticsbioRxivPreprintDec 2, 2024

A robust benchmark for detecting low-frequency variants in the HG002 Genome In A Bottle NIST reference material.

Camille A. Daniels, Adetola Abdulkadir, Megan H. Cleveland…·Nathan D. Olson

The paper develops a benchmark for detecting low-frequency mosaic variants in the HG002 reference material using high-coverage sequencing data and validates its utility across multiple technologies.

10 citations

humanwhole-genome sequencing

𝕏 PostBluesky

BioinformaticsThe ProstatePeer-reviewedDec 24, 2021

Genomic Analyses of the Metastasis-derived LNCaP, VCaP, and PC3-AR Prostate Cancer Cell Lines

Karolina Sienkiewicz, Chunsong Yang, Bryce M. Paschal, Aakrosh Ratan

The paper reports genomic analyses of prostate cancer cell lines, identifying mutations and chromothripsis events associated with TP53 inactivation.

10 citations

humanwhole-genome sequencing

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BioinformaticsbioRxivPreprintAug 10, 2020

Data Integration with SUMO Detects Latent Relationships Between Patients in Lower-Grade Gliomas

Karolina Sienkiewicz, Jinyu Chen, Ajay Chatrath…·Aakrosh Ratan

The paper integrates multi-omic data to identify a prognostic subtype in lower-grade gliomas with genomic features similar to Grade IV gliomas.

DOI 10.1101/2020.08.10.244343

humanbulk RNA-seq

𝕏 PostBluesky