Sijie Li

This study benchmarks preprocessing workflows for spatial transcriptomics data across multiple platforms and identifies platform-specific recommendations to improve downstream analysis.

GeneSPOT is a gene-centric framework that characterizes spatial gene relationships and their reorganization across biological conditions and time.

The paper introduces MAPS, a platform for unifying physical and molecular coordinates across modalities in spatial biology, demonstrating its effectiveness on diverse datasets and applications.

NicheTrans translates single-omics data into spatial multi-omics insights by integrating spatial and multi-modal information, outperforming existing methods in disease and tissue analysis.